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Image Search Results
Journal: Nature Communications
Article Title: In-situ cross-linking mass spectrometry reveals compartment-specific proteasomal interactions and structural heterogeneity
doi: 10.1038/s41467-025-65752-6
Figure Lengend Snippet: A Complex model of Rpt5 ( P17980 , residues 166–439) and PSMD9 ( O00233 ), with full torsional freedom allowed for the linker residues (115–134) between PSMD9’s two domains. B AlphaFold model of free PSMD9, with the backbone colored according to pLDDT values (yellow, <70; orange, <50). The arrow indicates the direction of domain closure upon binding to Rpt5. C AlphaFold-modeled complex structure between Rpn5 ( O00232 ), EIF3M ( Q7L2H7 ), and Rpn8 ( P51665 ), shown in two different perspectives. The sequence and structure comparison between EIF3M and Rpn9 ( Q9UNM6 ) are shown in Supplementary Fig. . Dashed lines indicate experimental intermolecular cross-links, with associated Lys residues denoted.
Article Snippet: The following antibodies were used:
Techniques: Binding Assay, Sequencing, Comparison
Journal: Nature Communications
Article Title: In-situ cross-linking mass spectrometry reveals compartment-specific proteasomal interactions and structural heterogeneity
doi: 10.1038/s41467-025-65752-6
Figure Lengend Snippet: A Co-immunoprecipitation confirms that EIF3M interacts with Rpn11, a proteasomal subunit, and with Rps5, a component of the 48S translation initiation complex. Three biological repeats were performed, with the representative micrograph shown here (raw micrographs provided in the Source data). B Immunofluorescence microscopy reveals co-localization of EIF3M with both Rps5 and Rpn11in the cytoplasm and nucleus. Fluorescence intensity measurements indicate that EIF3M/Rpn11 levels are approximately 3–5 times higher in the cytoplasm compared to the nucleus.
Article Snippet: The following antibodies were used:
Techniques: Immunoprecipitation, Immunofluorescence, Microscopy, Fluorescence